By a standing high court order, the seer cannot be arrested in the case till his bail application is disposed of.
Shankaracharya's counsel Fali S Nariman pointed out 'contradictions' in the evidence cited against the seer by the Tamil Nadu police.
The state police have also prepared a Special Leave Petition to challenge Monday's high court order granting bail to the Shankaracharya in the Radhakrishnan assault case.
The day-long bandh has been called by the VHP to give vent to the feelings of Hindus over the unjust arrest of the Kanchi seer.
Based on information provided by two people arrested in Chennai on November 9, the police got information about the seer's links with those hired to murder the temple official, she said.
The video shows that the Tamil Nadu police entered barefoot the premises in Mehboobnagar in Andhra Pradesh where the Shankaracharya was staying.
The Shankaracharya was brought in a convoy of cars from the Vellore prison at 1115 IST to the court of a first class judicial magistrate.
The hearing remained inconclusive today.
Veteran journalist Cho Ramaswamy says the Tamil Nadu police wouldn't have acted without solid evidence against the seer.
Board member Sajjad Nomani, however, made it clear that the AIMPLB would not make the first move.
The HC rejected the seers' bail application on Wednesday.
Bharatiya Janata Party member of Parliament Varun Gandhi wed graphic designer Yamini Roy Chowdhury in a simple ceremony attended by a handful of people in a temple on the banks of the Ganga in Varanasi on Sunday.
After completing the pre-charge formalities, Judicial First Class Magistrate G Uthamraj sent the case file to principal district judge, Chengalpattu, who will assign the case to a sessions judge.
Appu, alias Krishnasamy, was interrogated in a hotel in Mamallpuram in Kanchipuram district throughout Sunday night.
K Premkumar, heading the investigation into the Sankararaman murder case in which Kanchi seer Jayendra Saraswathi has been arrested, has been brough back as the SP, Kanchipuram.
President Ram Nath Kovind, Vice-President M Venkaiah Naidu, Prime Minister Narendra Modi, Bharatiya Janata Party chief Amit Shah, Congress president Rahul Gandhi and other leaders condoled the death of the seer.
Submitting the application before Magistrate G Uttamaraj, the counsel said he had earlier filed an application seeking certain facilities like hospitalisation and permission to conduct pujas when the seer was arrested.
Shops were open and bus and train services were unaffected.
The police on Friday filed a charge sheet in the sensational murder case that led to the arrest of both the pontiff and his deputy.
The public prosecutor sought the extension of the seer's police custody saying the police needed to verify some bank accounts.
An advocate and the president of a political outfit have filed the petitions opposing grant of bail to the seer.
The Supreme Court Friday issued notice to the state of Tamil Nadu on a petition filed by K G Kumaraswamy alias Appu, prime accused in the Sankararaman murder case.
The outfit also refused to comment on the rejection by the Muslim Law Board of Kanchi seer's proposals to resolve the Ayodhya issue.
VHP leader Pravin Togadia insisted any negotiated settlement should involve handing over the disputed site to Hindus unconditionally.
Vijayendra Saraswathi, 48, had become the 70th acharya of the Kanchi Kamakoti Peetam on May 29, 1983.
The TN government requested the SC Bench, headed by Chief Justice R C Lahoti, to hear the Special Leave Petition along with the appeal filed by the seer seeking bail in the Sankararaman murder case, which the court refused.\n
The BJP is seeking to make an issue out of Kanchi Shankaracharya's arrest and Jharkhand Mukthi Morcha chief Shibu Soren's reinduction into the Union Cabinet.
The BJP has dubbed the seer's arrest as an "assault on religion".
He urged Muslims not to make Ayodhya a 'prestige issue'.
The outfit's international president Ashok Singhal said there was no need for a new mosque in Ayodhya.
The SC has banned all religious activity in the 77 acres of land acquired by the government after the Babri mosque's demolition.
According to Yadav's counsel, the two cases have a lot in common.
The 74-year-old singer performed at the Shanmukhananda Hall in central Mumbai.